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Molecular Dynamics

Simulation of molecular motion and protein folding.

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#1

TDDFT Gradients and Nonadiabatic Couplings with Minimal Auxiliary Basis Set Approximation for Fewest-Switches Surface Hopping Dynamics

Cheng Fan, Zhichen Pu, Zehao Zhou et al. 2026-05-07

The electronic structure calculations remain a major bottleneck in ab initio nonadiabatic molecular dynamics. We develop an efficient TDDFT-based FSSH implementation in the GPU4PySCF package for medium-sized molecular systems. Our approach combines density fitting, TDDFT with minimal auxiliary basis

#2

Solvent-induced memory effects in a model electrolyte

Sleeba Varghese, Benjamin Rotenberg, Pierre Illien 2026-05-07

The fluctuations of ions in polar solvents remain poorly understood theoretically due to the complex coupling between ionic motion and solvent polarization. Indeed, while all-atom resolution can be achieved in numerical simulations, analytical approaches require suitable levels of coarse-graining. I

#3

FunctionalAgent: Towards end-to-end on-top functional design

Yuhao Chen, Donald G. Truhlar, Xiao He 2026-05-07

Multiconfiguration pair-density functional theory (MC-PDFT) offers an efficient and accurate framework for computing electronic energies in strongly correlated molecular systems, with the quality of the on-top functional being a key determinant of its predictive accuracy. Here we introduce Functiona

#7

Emergent conserved quantities via irreversibility

Alex Blokhuis, Martijn van Kuppeveld, Daan van de Weem et al. 2026-05-07

Conserved quantities increasingly underpin the inference of physical models. Recently new conserved quantities have been found in this context, that currently lack an interpretation. Here, we show that irreversible reactions in CRNs and Markov Chains lead to emergent conservation laws and broken cyc

#8

Polarizable atomic multipoles for learning long-range electrostatics

Dongjin Kim, Daniel S. King, Yoonjae Park et al. 2026-05-07

Long-range electrostatics and polarization remain central obstacles to extending machine learning interatomic potentials (MLIPs) to ionic, polar, and interfacial systems. Here, we introduce a semi-local framework for learning electrostatics from energies and forces using polarizable atomic multipole